Stem-loop cgr-mir-214

Accession

MI0020460

Description

Cricetulus griseus cgr-mir-214 precursor miRNA

Literature search

2 open access papers mention cgr-mir-214
(3 sentences)

Sequence

33577 reads, 206.0 reads per million, 35 experiments

gucaugugucUGCCUGUCUACACUUGCUGUGCAGAacauccgcucaccuguACAGCAGGCACAGACAGGCAGUcacau
...(((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).)))))

Structure

guc     u          ACA            Aacau 
   augug cUGCCUGUCU   CUUGCUGUGCAG     c
   ||||| ||||||||||   ||||||||||||     c
   uacac GACGGACAGA   GGACGACAuguc     g
---     U          CAC            cacuc 

Annotation confidence High

Genome context

JH000079.1: 370058-370135 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-214

Mature cgr-miR-214-5p

• Accession: MIMAT0023851
• Description: Cricetulus griseus cgr-miR-214-5p mature miRNA
• Sequence: 11 - UGCCUGUCUACACUUGCUGUGCAGA - 35
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-214-3p

• Accession: MIMAT0023852
• Description: Cricetulus griseus cgr-miR-214-3p mature miRNA
• Sequence: 52 - ACAGCAGGCACAGACAGGCAGU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75