Stem-loop cgr-mir-340

Accession

MI0020501

Description

Cricetulus griseus cgr-mir-340 precursor miRNA

Sequence

8646 reads, 125 reads per million, 6 experiments

uuggugugaUUAUAAAGCAAUGAGACUGAUUgucauaugucguuugugggaUCCGUCUCAGUUACUUUAUAGCCauaccuggua
..((((((.((((((((...((((((.((((.(((((.......))))))))).))))))....)))))))).)))))).....

Structure

---uu      a        -CAA      U    g     ug 
     ggugug UUAUAAAG    UGAGAC GAUU ucaua  u
     |||||| ||||||||    |||||| |||| |||||  c
     ccauaC GAUAUUUC    ACUCUG CUag ggugu  g
auggu      C        AUUG      C    -     uu 

Annotation confidence Not enough data

Genome context

JH000566.1: 523039-523122 [+]

Mature cgr-miR-340-5p

• Accession: MIMAT0023920
• Description: Cricetulus griseus cgr-miR-340-5p mature miRNA
• Sequence: 10 - UUAUAAAGCAAUGAGACUGAUU - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-340-3p

• Accession: MIMAT0023921
• Description: Cricetulus griseus cgr-miR-340-3p mature miRNA
• Sequence: 52 - UCCGUCUCAGUUACUUUAUAGCC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75