Stem-loop cgr-mir-30d

Accession

MI0020487

Description

Cricetulus griseus cgr-mir-30d precursor miRNA

Literature search

3 open access papers mention cgr-mir-30d
(5 sentences)

Sequence

3125886 reads, 13085.0 reads per million, 55 experiments

ucucaggaagucugugucUGUAAACAUCCCCGACUGGAAGCUguaagccacuuccaagCUUUCAGUCAGAUGUUUGCUGCcaccggcucu
.....(((.(((.(((.(.(((((((((...((((((((((((.(((...))).).))))))))))).))))))))).).))).))))))

Structure

ucuca   a   u   u U         CCC           - u   c 
     gga guc gug c GUAAACAUC   GACUGGAAGCU g aag  
     ||| ||| ||| | |||||||||   ||||||||||| | ||| c
     ucu cgg cac G CGUUUGUAG   CUGACUUUCga c uuc  
-----   -   c   C U         --A           a c   a 

Annotation confidence High

Genome context

JH050121.1: 453-542 [+]

Mature cgr-miR-30d-5p

• Accession: MIMAT0052460
• Description: Cricetulus griseus cgr-miR-30d-5p mature miRNA
• Sequence: 19 - UGUAAACAUCCCCGACUGGAAGCU - 42
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-30d-3p

• Accession: MIMAT0023899
• Description: Cricetulus griseus cgr-miR-30d-3p mature miRNA
• Sequence: 59 - CUUUCAGUCAGAUGUUUGCUGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75