Stem-loop cgr-mir-33

Accession

MI0020497

Description

Cricetulus griseus cgr-mir-33 precursor miRNA

Sequence

16910 reads, 87.0 reads per million, 55 experiments

gcugcugugGUGCAUUGUAGUUGCAUUGCauguuccggcaguaccugugCAAUGUUCCCACAGUGCAUCAcagaggccug
(((.((((((((((((((.(..((((((((((....((.....))))))))))))..).)))))))))))))).)))...

Structure

---   g              A UU          uucc  c 
   gcu cugugGUGCAUUGU G  GCAUUGCaug    gg a
   ||| |||||||||||||| |  ||||||||||    || g
   cgg gacACUACGUGACA C  UGUAACgugu    cc u
guc   a              C CU          ----  a 

Annotation confidence High

Genome context

JH001848.1: 153548-153627 [+]

Mature cgr-miR-33-5p

• Accession: MIMAT0023915
• Description: Cricetulus griseus cgr-miR-33-5p mature miRNA
• Sequence: 10 - GUGCAUUGUAGUUGCAUUGC - 29
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-33-3p

• Accession: MIMAT0052464
• Description: Cricetulus griseus cgr-miR-33-3p mature miRNA
• Sequence: 50 - CAAUGUUCCCACAGUGCAUCA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75