Stem-loop cgr-mir-196b

Accession

MI0020445

Description

Cricetulus griseus cgr-mir-196b precursor miRNA

Sequence

50704 reads, 707 reads per million, 6 experiments

gucggugauuUAGGUAGUUUCCUGUUGUUGGGauccaccuuucucucgacagcacgacacugccuucauuacuucaguug
...((((((..(((((((.((.(((((((((((..........))))))))))).)).)))))))..)))))).......

Structure

----guc      uU       U  C           ucca 
       ggugau  AGGUAGU UC UGUUGUUGGGa    c
       ||||||  ||||||| || |||||||||||     
       ucauua  uccguca ag acgacagcucu    c
guugacu      cu       c  c           cuuu 

Annotation confidence Low

Genome context

JH000291.1: 82690-82769 [-]

Mature cgr-miR-196b

• Accession: MIMAT0023833
• Description: Cricetulus griseus cgr-miR-196b mature miRNA
• Sequence: 11 - UAGGUAGUUUCCUGUUGUUGGG - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75