Stem-loop cgr-mir-143

Accession

MI0020405

Description

Cricetulus griseus cgr-mir-143 precursor miRNA

Literature search

2 open access papers mention cgr-mir-143
(5 sentences)

Sequence

2192455 reads, 5125.0 reads per million, 49 experiments

cugucucccagccugaGGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUCaggaaggga
.....((((..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..))))

Structure

cuguc    ag      G         G      U  -  ag 
     uccc  ccugaG UGCAGUGCU CAUCUC GG uc  u
     ||||  |||||| ||||||||| |||||| || ||   
     aggg  ggaCUC AUGUCACGA GUAGAG cu ag  u
-----    aa      G         A      U  g  gg 

Annotation confidence High

Genome context

JH000986.1: 202913-202992 [-]

Mature cgr-miR-143-5p

• Accession: MIMAT0052435
• Description: Cricetulus griseus cgr-miR-143-5p mature miRNA
• Sequence: 17 - GGUGCAGUGCUGCAUCUCUGG - 37
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-143-3p

• Accession: MIMAT0023772
• Description: Cricetulus griseus cgr-miR-143-3p mature miRNA
• Sequence: 51 - UGAGAUGAAGCACUGUAGCUC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75