Stem-loop cgr-mir-497

Accession

MI0020532

Description

Cricetulus griseus cgr-mir-497 precursor miRNA

Literature search

1 open access papers mention cgr-mir-497
(1 sentences)

Sequence

8453 reads, 121 reads per million, 6 experiments

cucccgcccCAGCAGCACACUGUGGUUUGUAcggcacuguggccacgucCAAACCACACUGUGGUGUUAGAgcgagggugg
...(((((((((((.((((.(((((((((.(((((......)))..)).))))))))).)))).)))).....).))))))

Structure

cuc      - -----    G    C         U  --   ac 
   ccgccc C     AGCA CACA UGUGGUUUG Ac  ggc  u
   |||||| |     |||| |||| ||||||||| ||  |||   
   gguggg g     UUGU GUGU ACACCAAAC ug  ccg  g
---      a cgAGA    G    C         c  ca   gu 

Annotation confidence Not enough data

Genome context

JH000064.1: 2276442-2276522 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-497

Mature cgr-miR-497-5p

• Accession: MIMAT0023970
• Description: Cricetulus griseus cgr-miR-497-5p mature miRNA
• Sequence: 10 - CAGCAGCACACUGUGGUUUGUA - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-497-3p

• Accession: MIMAT0023971
• Description: Cricetulus griseus cgr-miR-497-3p mature miRNA
• Sequence: 50 - CAAACCACACUGUGGUGUUAGA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75