Stem-loop cgr-mir-542

Accession

MI0020540

Description

Cricetulus griseus cgr-mir-542 precursor miRNA

Sequence

42506 reads, 594 reads per million, 6 experiments

ucucaggcguCUCGGGGAUCAUCAUGUCACGAgauacacugugcccuUGUGACAGAUUGAUAACUGAAAGgucuuggaa
(((.((((.(.((((..((((...(((((((((............)))))))))...))))..)))).).)))).))).

Structure

-   c    g C    GG    UCA         auaca 
 ucu aggc u UCGG  AUCA   UGUCACGAg     c
 ||| |||| | ||||  ||||   |||||||||      
 agg ucug A AGUC  UAGU   ACAGUGUuc     u
a   u    G A    AA    UAG         ccgug 

Annotation confidence Low

Genome context

JH000353.1: 1170704-1170782 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cgr-mir-542

Mature cgr-miR-542-5p

• Accession: MIMAT0023983
• Description: Cricetulus griseus cgr-miR-542-5p mature miRNA
• Sequence: 11 - CUCGGGGAUCAUCAUGUCACGA - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-542-3p

• Accession: MIMAT0023984
• Description: Cricetulus griseus cgr-miR-542-3p mature miRNA
• Sequence: 48 - UGUGACAGAUUGAUAACUGAAAG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75