Stem-loop cgr-mir-34c

Accession

MI0020507

Description

Cricetulus griseus cgr-mir-34c precursor miRNA

Literature search

2 open access papers mention cgr-mir-34c
(4 sentences)

Sequence

3818972 reads, 53089 reads per million, 6 experiments

cuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaguaccAAUCACUAACCACACGGCCAGGuaaaaagacu
((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..))...

Structure

---  ag     A   A    A     C      C  a 
   cu  uuacu GGC GUGU GUUAG UGAUUG ua u
   ||  ||||| ||| |||| ||||| |||||| ||  
   ga  aauGG CCG CACA CAAUC ACUAAc au a
uca  aa     A   G    C     -      c  g 

Annotation confidence High

Genome context

JH000115.1: 808827-808900 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-34c

Mature cgr-miR-34c-5p

• Accession: MIMAT0023929
• Description: Cricetulus griseus cgr-miR-34c-5p mature miRNA
• Sequence: 10 - AGGCAGUGUAGUUAGCUGAUUGC - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-34c-3p

• Accession: MIMAT0023930
• Description: Cricetulus griseus cgr-miR-34c-3p mature miRNA
• Sequence: 43 - AAUCACUAACCACACGGCCAGG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75