Stem-loop cgr-mir-1839

Accession

MI0020426

Description

Cricetulus griseus cgr-mir-1839 precursor miRNA

Sequence

52586 reads, 139.0 reads per million, 55 experiments

cuaaaugaaAAGGUAGAUAGAACAGGUCUUGuuugcaaaauaaauccaAGACCUACUUAUCUACCAACAGCcauuaccua
...........(((((((((...((((((((.((........))..))))))))..)))))))))...............

Structure

----cuaaaugaaAA         AAC        -u  gca 
               GGUAGAUAG   AGGUCUUG  uu   a
               |||||||||   ||||||||  ||    
               CCAUCUAUU   UCCAGAac  aa   a
auccauuacCGACAA         -CA        cu  aua 

Annotation confidence Medium

Genome context

JH001657.1: 14500-14579 [+]

Mature cgr-miR-1839-5p

• Accession: MIMAT0023807
• Description: Cricetulus griseus cgr-miR-1839-5p mature miRNA
• Sequence: 10 - AAGGUAGAUAGAACAGGUCUUG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-1839-3p

• Accession: MIMAT0023808
• Description: Cricetulus griseus cgr-miR-1839-3p mature miRNA
• Sequence: 49 - AGACCUACUUAUCUACCAACAGC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75