Stem-loop cgr-mir-27b

Accession

MI0020474

Description

Cricetulus griseus cgr-mir-27b precursor miRNA

Sequence

60397 reads, 854 reads per million, 6 experiments

aacaaggugcAGAGCUUAGCUGAUUGGUGAACagugauugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccugaaga
....(((((((((((((((((.((((.(((((((....(((...)))..)))))))))))))))))))))))))))).....

Structure

-aaca                 G    G       ugau   u 
     aggugcAGAGCUUAGCU AUUG UGAACag    ugg  
     ||||||||||||||||| |||| |||||||    ||| u
     uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
agaag                 -    -       --uc   u 

Annotation confidence Low

Genome context

JH002734.1: 36430-36511 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cgr-mir-27b

Mature cgr-miR-27b-5p

• Accession: MIMAT0023876
• Description: Cricetulus griseus cgr-miR-27b-5p mature miRNA
• Sequence: 11 - AGAGCUUAGCUGAUUGGUGAAC - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-27b-3p

• Accession: MIMAT0023877
• Description: Cricetulus griseus cgr-miR-27b-3p mature miRNA
• Sequence: 53 - UUCACAGUGGCUAAGUUCUGC - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75