Stem-loop cgr-mir-130b

Accession

MI0020395

Description

Cricetulus griseus cgr-mir-130b precursor miRNA

Sequence

8074 reads, 104 reads per million, 6 experiments

cuugcuggacACUCUUUCCCUGUUGCACUACUgugggccacuggggagCAGUGCAAUGAUGAAAGGGCAUcugucaggc
...(((.(((((((((((..(((((((((.((.(((....))).))...)))))))))..)))))))....)))).)))

Structure

cuu   g    ----       CC         --A  g   g 
   gcu gacA    CUCUUUC  UGUUGCACU   CU ugg c
   ||| ||||    |||||||  |||||||||   || |||  
   cgg cugu    GGGAAAG  GUAACGUGA   gg guc c
---   a    cUAC       UA         Cga  g   a 

Annotation confidence Not enough data

Genome context

JH000340.1: 1046830-1046908 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-130b

Mature cgr-miR-130b-5p

• Accession: MIMAT0023756
• Description: Cricetulus griseus cgr-miR-130b-5p mature miRNA
• Sequence: 11 - ACUCUUUCCCUGUUGCACUACU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-130b-3p

• Accession: MIMAT0023757
• Description: Cricetulus griseus cgr-miR-130b-3p mature miRNA
• Sequence: 49 - CAGUGCAAUGAUGAAAGGGCAU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75