Stem-loop cgr-mir-3072

Accession

MI0020483

Description

Cricetulus griseus cgr-mir-3072 precursor miRNA

Sequence

3119 reads, 43 reads per million, 6 experiments

gggagugcgAGGGACCCCGAGGGAGGGCAGGcugccccaggcccUGCCCCCUCCAGGAAGCCUUCUcgcuccagcc
.((((((.(((((...((..(((.(((((((..(((...)))))))))).)))..))...))))).))))))....

Structure

---g      c     ACC  GA   A       cu   c 
    ggagug gAGGG   CC  GGG GGGCAGG  gcc  
    |||||| |||||   ||  ||| |||||||  ||| c
    ccucgc CUUCC   GG  CUC CCCGUcc  cgg  
ccga      U     GAA  AC   C       --   a 

Annotation confidence Low

Genome context

JH000884.1: 77692-77767 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cgr-mir-3072

Mature cgr-miR-3072-5p

• Accession: MIMAT0023892
• Description: Cricetulus griseus cgr-miR-3072-5p mature miRNA
• Sequence: 10 - AGGGACCCCGAGGGAGGGCAGG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-3072-3p

• Accession: MIMAT0023893
• Description: Cricetulus griseus cgr-miR-3072-3p mature miRNA
• Sequence: 45 - UGCCCCCUCCAGGAAGCCUUCU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75