Stem-loop cgr-mir-187

Accession

MI0020431

Description

Cricetulus griseus cgr-mir-187 precursor miRNA

Sequence

2688 reads, 11.0 reads per million, 47 experiments

gaugcggguccucAGGCUACAACACAGGACCCGGGcgcuccucugaccccUCGUGUCUUGUGUUGCAGCCGgagggacgc
...(((..(((((.((((.(((((((((((.((((.(.((....)).).)))).))))))))))).)))).))))).)))

Structure

gau   gg     A    A           C    c c  c 
   gcg  uccuc GGCU CAACACAGGAC CGGG g uc u
   |||  ||||| |||| ||||||||||| |||| | ||  
   cgc  gggag CCGA GUUGUGUUCUG GCUc c ag c
---   -a     G    C           U    c c  u 

Annotation confidence High

Genome context

JH000234.1: 1449802-1449881 [-]

Mature cgr-miR-187-5p

• Accession: MIMAT0052439
• Description: Cricetulus griseus cgr-miR-187-5p mature miRNA
• Sequence: 14 - AGGCUACAACACAGGACCCGGG - 35
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-187-3p

• Accession: MIMAT0023815
• Description: Cricetulus griseus cgr-miR-187-3p mature miRNA
• Sequence: 51 - UCGUGUCUUGUGUUGCAGCCG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75