Stem-loop cgr-mir-429

Accession

MI0020525

Description

Cricetulus griseus cgr-mir-429 precursor miRNA

Sequence

127878 reads, 282.0 reads per million, 51 experiments

ggUACACUGCCUGCUGAUGGAUgucuuaccagacaugguuagaucuggaugcucugucUAAUACUGUCUGGUAAUGCCGUccauccaugg
((((...))))....((((((((.(((((((((((..(((((((..(((...))))))))))..)))))))))).).)))))))).....

Structure

ggUACACUGCCUGCU        u -          ug       cu   u 
               GAUGGAUg c uuaccagaca  guuagau  gga  
               |||||||| | ||||||||||  |||||||  ||| g
               cuaccUGC G AAUGGUCUGU  UAAUcug  ucu  
----------gguac        C U          CA       --   c 

Annotation confidence Medium

Genome context

JH001219.1: 153203-153292 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-429

Mature cgr-miR-429-5p

• Accession: MIMAT0052473
• Description: Cricetulus griseus cgr-miR-429-5p mature miRNA
• Sequence: 3 - UACACUGCCUGCUGAUGGAU - 22
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-429-3p

• Accession: MIMAT0023960
• Description: Cricetulus griseus cgr-miR-429-3p mature miRNA
• Sequence: 59 - UAAUACUGUCUGGUAAUGCCGU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75