Stem-loop rno-mir-149

Accession

MI0030351

Description

Rattus norvegicus rno-mir-149 precursor miRNA

Literature search

76 open access papers mention rno-mir-149
(138 sentences)

Sequence

372886 reads, 371.0 reads per million, 481 experiments

gccggugcccgggcUCUGGCUCCGUGUCUUCACUCCCguguuuguccgaggaggGAGGGAGGGACGGGGGCGGUGCuggggcaacugga
.(((((((((.(((.(((.((((((.(((((.(((((.(.((.....)).).)))))))))).)))))).))).))).)))).))))).

Structure

g     -    g   U   G      G     A     g g  u 
 ccggu gccc ggc CUG CUCCGU UCUUC CUCCC u uu g
 ||||| |||| ||| ||| |||||| ||||| ||||| | || u
 gguca cggg uCG GGC GGGGCA GGAGG GAGgg g ag c
a     a    g   U   G      G     -     a g  c 

Annotation confidence High

Genome context

chr9: 100016441-100016529 [+]

Mature rno-miR-149-5p

• Accession: MIMAT0035726
• Description: Rattus norvegicus rno-miR-149-5p mature miRNA
• Sequence: 15 - UCUGGCUCCGUGUCUUCACUCCC - 37
• Evidence: experimental ; RNAseq-metaanalysis [1]

Mature rno-miR-149-3p

• Accession: MIMAT0035727
• Description: Rattus norvegicus rno-miR-149-3p mature miRNA
• Sequence: 55 - GAGGGAGGGACGGGGGCGGUGC - 76
• Evidence: experimental ; RNAseq-metaanalysis [1]

References

1. PubMed ID: 23329697
   Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters
   "Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A"
   "RNA (2013) 19:365-379