Stem-loop rno-mir-149

Accession

MI0030351

Description

Rattus norvegicus rno-mir-149 precursor miRNA

Literature search

5 open access papers mention rno-mir-149
(12 sentences)

Sequence

225716 reads, 361 reads per million, 471 experiments

gccggugcccgggcUCUGGCUCCGUGUCUUCACUCCCguguuuguccgaggagggagggaGGGACGGGGGCGGUGCUGgggcaacugga
.(((((((((.(((.(((.((((((.(((((.(((((.(.((.....)).).)))))))))).)))))).))).))).)))).))))).

Structure

g     -    g   U   G      G     A     g g  u 
 ccggu gccc ggc CUG CUCCGU UCUUC CUCCC u uu g
 ||||| |||| ||| ||| |||||| ||||| ||||| | || u
 gguca cggg UCG GGC GGGGCA GGagg gaggg g ag c
a     a    G   U   G      G     -     a g  c 

Annotation confidence High

Genome context

chr9: 100016441-100016529 [+]

Mature rno-miR-149-5p

• Accession: MIMAT0035726
• Description: Rattus norvegicus rno-miR-149-5p mature miRNA
• Sequence: 15 - UCUGGCUCCGUGUCUUCACUCCC - 37
• Evidence: experimental ; RNAseq-metaanalysis [1]

Mature rno-miR-149-3p

• Accession: MIMAT0035727
• Description: Rattus norvegicus rno-miR-149-3p mature miRNA
• Sequence: 61 - GGGACGGGGGCGGUGCUG - 78
• Evidence: experimental ; RNAseq-metaanalysis [1]

References

1. PubMed ID: 23329697
   Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters
   "Uva P, Da Sacco L, Del Corno M, Baldassarre A, Sestili P, Orsini M, Palma A, Gessani S, Masotti A"
   "RNA (2013) 19:365-379