Stem-loop cgr-mir-100

Accession

MI0020376

Description

Cricetulus griseus cgr-mir-100 precursor miRNA

Literature search

2 open access papers mention cgr-mir-100
(37 sentences)

Sequence

2383757 reads, 14469.0 reads per million, 55 experiments

uguugccacaAACCCGUAGAUCCGAACUUGUGUugaucguccacACAAGCUUGUGUCUAUAGGUAUgugucuggua
......((((.(((.((((((.(((.(((((((.((...)).))))))).))).)))))).))).)))).......

Structure

-uguugc    A   C      C   A       u  u 
       caca ACC GUAGAU CGA CUUGUGU ga  
       |||| ||| |||||| ||| ||||||| || c
       gugU UGG UAUCUG GUU GAACAca cu  
auggucu    A   A      U   C       c  g 

Annotation confidence High

Genome context

JH002112.1: 153527-153602 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-100

Mature cgr-miR-100-5p

• Accession: MIMAT0023726
• Description: Cricetulus griseus cgr-miR-100-5p mature miRNA
• Sequence: 11 - AACCCGUAGAUCCGAACUUGUGU - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-100-3p

• Accession: MIMAT0023727
• Description: Cricetulus griseus cgr-miR-100-3p mature miRNA
• Sequence: 45 - ACAAGCUUGUGUCUAUAGGUAU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75