Stem-loop cgr-mir-500

Accession

MI0020534

Description

Cricetulus griseus cgr-mir-500 precursor miRNA

Sequence

1373 reads, 11.0 reads per million, 15 experiments

cucccccucucuAAUCCUUGCUAUCUAGGUGCUAGUgcuaucucaaugcAAUGCACCUGGGCAAGGGUUCagagaaggug
....((.((((((((((((((...((((((((...(((.........)))..))))))))))))))))).))))).))..

Structure

cucc  c     -         UAU        UAG   uau 
    cc ucucu AAUCCUUGC   CUAGGUGC   Ugc   c
    || ||||| |||||||||   ||||||||   |||   u
    gg agaga UUGGGAACG   GGUCCACG   Acg   c
--gu  a     C         ---        -UA   uaa 

Annotation confidence High

Genome context

Unknown

Mature cgr-miR-500-5p

• Accession: MIMAT0052476
• Description: Cricetulus griseus cgr-miR-500-5p mature miRNA
• Sequence: 13 - AAUCCUUGCUAUCUAGGUGCUAGU - 36
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-500-3p

• Accession: MIMAT0023974
• Description: Cricetulus griseus cgr-miR-500-3p mature miRNA
• Sequence: 50 - AAUGCACCUGGGCAAGGGUUC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75