Stem-loop cgr-mir-298

Accession

MI0020477

Description

Cricetulus griseus cgr-mir-298 precursor miRNA

Literature search

1 open access papers mention cgr-mir-298
(1 sentences)

Sequence

30910 reads, 209.0 reads per million, 55 experiments

caggccuuuGGCAGAGGAGGGCUGUUCUUCccuuguguuuugugacugggAGGAACUAGCCUUCUCUCUGCUUaggagugg
((..(((..(((((((((((((((((((((((..((........)).))))))))).))))))).))))))).)))..)).

Structure

-  gg   uu       -       -         uu  guu 
 ca  ccu  GGCAGAG GAGGGCU GUUCUUCcc  gu   u
 ||  |||  ||||||| ||||||| |||||||||  ||    
 gu  gga  UCGUCUC CUUCCGA CAAGGAggg  ca   u
g  ga   -U       U       U         -u  gug 

Annotation confidence High

Genome context

JH000054.1: 2908283-2908363 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-298

Mature cgr-miR-298-5p

• Accession: MIMAT0023881
• Description: Cricetulus griseus cgr-miR-298-5p mature miRNA
• Sequence: 10 - GGCAGAGGAGGGCUGUUCUUC - 30
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-298-3p

• Accession: MIMAT0023882
• Description: Cricetulus griseus cgr-miR-298-3p mature miRNA
• Sequence: 51 - AGGAACUAGCCUUCUCUCUGCUU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75