Stem-loop cgr-mir-652

Accession

MI0020546

Description

Cricetulus griseus cgr-mir-652 precursor miRNA

Sequence

46094 reads, 633 reads per million, 6 experiments

augcacugcaCAACCCUAGGAGAGGGUGCCAUUCAcauagacuauaguugAAUGGCGCCACUAGGGUUGUGcagugcaca
.((((((((((((((((((.....(((((((((((..((.....))..))))))))))).))))))))))))))))))..

Structure

-a                  GAGAG           ca  g 
  ugcacugcaCAACCCUAG     GGUGCCAUUCA  ua a
  ||||||||||||||||||     |||||||||||  || c
  acgugacGUGUUGGGAUC     CCGCGGUAAgu  au u
ac                  ----A           ug  a 

Annotation confidence Low

Genome context

JH001000.1: 384867-384946 [-]

Mature cgr-miR-652-5p

• Accession: MIMAT0023991
• Description: Cricetulus griseus cgr-miR-652-5p mature miRNA
• Sequence: 11 - CAACCCUAGGAGAGGGUGCCAUUCA - 35
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-652-3p

• Accession: MIMAT0023992
• Description: Cricetulus griseus cgr-miR-652-3p mature miRNA
• Sequence: 51 - AAUGGCGCCACUAGGGUUGUG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75