Stem-loop cgr-mir-25

Accession

MI0020470

Description

Cricetulus griseus cgr-mir-25 precursor miRNA

Sequence

126355 reads, 1753 reads per million, 6 experiments

cgggacuggccaguguugagAGGCGGAGACUUGGGCAAUUGCUggaagcugcccugggCAUUGCACUUGUCUCGGUCUGAcagugccggcccaacacug
.(((.(((((.(.((((...((((.(((((..(.(((((..((((........))))..))))).)..))))).)))))))).))))))))).......

Structure

------c   a     c g    gag    G     UU G     UG    aag 
       ggg cuggc a uguu   AGGC GAGAC  G GCAAU  CUgg   c
       ||| ||||| | ||||   |||| |||||  | |||||  ||||    
       ccc ggccg u acAG   UCUG CUCUG  C CGUUA  gguc   u
gucacaa   -     - g    ---    G     UU A     Cg    ccg 

Annotation confidence Not enough data

Genome context

JH001296.1: 178664-178762 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-25

Mature cgr-miR-25-5p

• Accession: MIMAT0023869
• Description: Cricetulus griseus cgr-miR-25-5p mature miRNA
• Sequence: 21 - AGGCGGAGACUUGGGCAAUUGCU - 43
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-25-3p

• Accession: MIMAT0023870
• Description: Cricetulus griseus cgr-miR-25-3p mature miRNA
• Sequence: 59 - CAUUGCACUUGUCUCGGUCUGA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75