Stem-loop cgr-mir-106b

Accession

MI0020379

Description

Cricetulus griseus cgr-mir-106b precursor miRNA

Literature search

1 open access papers mention cgr-mir-106b
(4 sentences)

Sequence

202701 reads, 633.0 reads per million, 55 experiments

cugcuggggcUAAAGUGCUGACAGUGCAGAUAgugguccucucuguGCUACCGCACUGUGGGUACUUGCUgcuccagcagg
((((((((((..(((((((.(((((((.....(((((.(.....).))))).))))))).)))))))...)))))))))).

Structure

-          -UA       G       AGAUA     c u 
 cugcuggggc   AAGUGCU ACAGUGC     guggu c c
 ||||||||||   ||||||| |||||||     ||||| | u
 gacgaccucg   UUCAUGG UGUCACG     CAUCG g c
g          UCG       G       ----C     u u 

Annotation confidence High

Genome context

JH001296.1: 179099-179179 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cgr-mir-106b

Mature cgr-miR-106b-5p

• Accession: MIMAT0023732
• Description: Cricetulus griseus cgr-miR-106b-5p mature miRNA
• Sequence: 11 - UAAAGUGCUGACAGUGCAGAUA - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-106b-3p

• Accession: MIMAT0023733
• Description: Cricetulus griseus cgr-miR-106b-3p mature miRNA
• Sequence: 47 - GCUACCGCACUGUGGGUACUUGCU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75