Stem-loop cgr-mir-200c

Accession

MI0020453

Description

Cricetulus griseus cgr-mir-200c precursor miRNA

Sequence

481322 reads, 1889.0 reads per million, 37 experiments

gguuggguaggggcccuCGUCUUACCCAGCAGUGUUUGGgugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGAggccccuguc
.....((((((((((.(((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))).))))))))))

Structure

gguug          c     -      A        U   u   gg 
     gguaggggcc uCGUC UUACCC GCAGUGUU GGg gcu  u
     |||||||||| ||||| |||||| |||||||| ||| |||  u
     cuguccccgg GGUAG AAUGGG CGUCAUAA cuc uga  g
-----          A     U      C        U   -   gg 

Annotation confidence High

Genome context

JH000031.1: 4002276-4002365 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-200c

Mature cgr-miR-200c-5p

• Accession: MIMAT0052451
• Description: Cricetulus griseus cgr-miR-200c-5p mature miRNA
• Sequence: 18 - CGUCUUACCCAGCAGUGUUUGG - 39
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-200c-3p

• Accession: MIMAT0023843
• Description: Cricetulus griseus cgr-miR-200c-3p mature miRNA
• Sequence: 58 - UAAUACUGCCGGGUAAUGAUGGA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75