Stem-loop cgr-mir-185

Accession

MI0020429

Description

Cricetulus griseus cgr-mir-185 precursor miRNA

Literature search

3 open access papers mention cgr-mir-185
(7 sentences)

Sequence

42330 reads, 554 reads per million, 6 experiments

gugagggauUGGAGAGAAAGGCAGUUCCUGAugguccccucccAGGGGCUGGCUUUCCUCUGGUccuucucucc
(.((((((((((((.(((((.(((((((((..((......))))))))))).))))))))))))))))).)...

Structure

--- u            A     G         Au  uc 
   g gagggauUGGAG GAAAG CAGUUCCUG  gg  c
   | |||||||||||| ||||| |||||||||  ||   
   c cuuccUGGUCUC CUUUC GUCGGGGAc  cc  c
ccu u            -     G         --  uc 

Annotation confidence Not enough data

Genome context

JH000319.1: 980130-980203 [+]

Mature cgr-miR-185-5p

• Accession: MIMAT0023811
• Description: Cricetulus griseus cgr-miR-185-5p mature miRNA
• Sequence: 10 - UGGAGAGAAAGGCAGUUCCUGA - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-185-3p

• Accession: MIMAT0023812
• Description: Cricetulus griseus cgr-miR-185-3p mature miRNA
• Sequence: 44 - AGGGGCUGGCUUUCCUCUGGU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75