Stem-loop cgr-mir-129

Accession

MI0020392

Description

Cricetulus griseus cgr-mir-129 precursor miRNA

Sequence

432 reads, 2.0 reads per million, 36 experiments

ccuuuggauCUUUUUGCGGUCUGGGCUUGCuguucucuagacaguagucaggAAGCCCUUACCCCAAAAAGUAUcuacgg
.((.((((((((((((.(((..((((((.(((..((((....)).)).))).))))))..))).))))))).))))).))

Structure

c  u     -       C   CU      G   uu  -  a 
 cu uggau CUUUUUG GGU  GGGCUU Cug  cu cu g
 || ||||| ||||||| |||  |||||| |||  || ||  
 gg aucUA GAAAAAC CCA  CCCGAA gac  ga ga a
-  c     U       C   UU      g   -u  u  c 

Annotation confidence High

Genome context

JH000073.1: 1210829-1210908 [+]

Mature cgr-miR-129-5p

• Accession: MIMAT0023751
• Description: Cricetulus griseus cgr-miR-129-5p mature miRNA
• Sequence: 10 - CUUUUUGCGGUCUGGGCUUGC - 30
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-129-3p

• Accession: MIMAT0052432
• Description: Cricetulus griseus cgr-miR-129-3p mature miRNA
• Sequence: 53 - AAGCCCUUACCCCAAAAAGUAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75