Stem-loop cgr-mir-181a

Accession

MI0020420

Description

Cricetulus griseus cgr-mir-181a precursor miRNA

Sequence

105229 reads, 1457 reads per million, 6 experiments

gcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaauucaaauaaaaACCAUCGACCGUUGAUUGUACCcuauagcuaa
(((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..)))...

Structure

---   uc  u A   U      CU       A    ggaau 
   gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
   |||  || | ||| ||||||  ||||||| ||||     c
   cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
aau   ua  C A   U      --       -    aauaa 

Annotation confidence High

Genome context

JH000549.1: 850517-850597 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-181a

Mature cgr-miR-181a-5p

• Accession: MIMAT0023797
• Description: Cricetulus griseus cgr-miR-181a-5p mature miRNA
• Sequence: 10 - AACAUUCAACGCUGUCGGUGAGU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-181a-3p

• Accession: MIMAT0023798
• Description: Cricetulus griseus cgr-miR-181a-3p mature miRNA
• Sequence: 50 - ACCAUCGACCGUUGAUUGUACC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75