Stem-loop cgr-mir-205

Accession

MI0020455

Description

Cricetulus griseus cgr-mir-205 precursor miRNA

Literature search

2 open access papers mention cgr-mir-205
(2 sentences)

Sequence

840456 reads, 6427.0 reads per million, 21 experiments

gauccucuugUCCUUCAUUCCACCGGAGUCUGUcuuaugccaaccaGAUUUCAGUGGAGUGAAGCUCAggaggcauggag
...(((((((..(((((((((((.((((((((............)))))))).)))))))))))..))))))).......

Structure

----gau       UC           C        Ucuua 
       ccucuug  CUUCAUUCCAC GGAGUCUG     u
       |||||||  ||||||||||| ||||||||      
       ggaggAC  GAAGUGAGGUG CUUUAGac     g
gagguac       UC           A        caacc 

Annotation confidence High

Genome context

JH000117.1: 1381123-1381202 [-]

Mature cgr-miR-205-5p

• Accession: MIMAT0023845
• Description: Cricetulus griseus cgr-miR-205-5p mature miRNA
• Sequence: 11 - UCCUUCAUUCCACCGGAGUCUGU - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-205-3p

• Accession: MIMAT0052453
• Description: Cricetulus griseus cgr-miR-205-3p mature miRNA
• Sequence: 47 - GAUUUCAGUGGAGUGAAGCUCA - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75