Stem-loop cgr-mir-204

Accession

MI0020454

Description

Cricetulus griseus cgr-mir-204 precursor miRNA

Literature search

2 open access papers mention cgr-mir-204
(5 sentences)

Sequence

5295 reads, 20.0 reads per million, 49 experiments

acucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggagGCUGGGAAGGCAAAGGGACGUucaauuguca
((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))..

Structure

--  ucg     U          A     U    gagaau 
  ac   uggac UCCCUUUGUC UCCUA GCCU      a
  ||   ||||| |||||||||| ||||| ||||      u
  ug   acuUG AGGGAAACGG AGGGU CGga      a
ac  uua     C          A     -    ggaagu 

Annotation confidence High

Genome context

JH001792.1: 105263-105342 [-]

Mature cgr-miR-204-5p

• Accession: MIMAT0023844
• Description: Cricetulus griseus cgr-miR-204-5p mature miRNA
• Sequence: 11 - UUCCCUUUGUCAUCCUAUGCCU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-204-3p

• Accession: MIMAT0052452
• Description: Cricetulus griseus cgr-miR-204-3p mature miRNA
• Sequence: 50 - GCUGGGAAGGCAAAGGGACGU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75