Stem-loop cgr-mir-6091

Accession

MI0020565

Description

Cricetulus griseus cgr-mir-6091 precursor miRNA

Sequence

353 reads, 2.0 reads per million, 49 experiments

ccaaugcgagaAUGCCUGAGAAGGUGACCUGGAUucgaagaauguggaUCCUGCGUCGACUUCUCAGGAGAUacugggaa
....(.(.((.((.(((((((((..((((.(((((((.......))))))).).)))..)))))))))..)).)).).).

Structure

ccaa g g  a  -G         GU   - U       aa 
    u c ag AU  CCUGAGAAG  GAC C GGAUucg  g
    | | || ||  |||||||||  ||| | |||||||  a
    a g uc UA  GGACUCUUC  CUG G CCUaggu  a
---a g g  a  GA         AG   C U       gu 

Annotation confidence Medium

Genome context

JH000161.1: 863860-863939 [-]

Mature cgr-miR-6091-5p

• Accession: MIMAT0052486
• Description: Cricetulus griseus cgr-miR-6091-5p mature miRNA
• Sequence: 12 - AUGCCUGAGAAGGUGACCUGGAU - 34
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-6091-3p

• Accession: MIMAT0024018
• Description: Cricetulus griseus cgr-miR-6091-3p mature miRNA
• Sequence: 49 - UCCUGCGUCGACUUCUCAGGAGAU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75