Stem-loop cgr-mir-6092

Accession

MI0020566

Description

Cricetulus griseus cgr-mir-6092 precursor miRNA

Sequence

22710 reads, 61.0 reads per million, 54 experiments

ggucccugcuUCAGAGCAGGGUCAUGUCUUUGUucuagcagguuguaccaUGGACAAGGCUGUGCUCUGAGugcugaggc
.(((.(.(((((((((((.((((.(((((.((.....(((...)))..)).))))).)))).))))))))).)).).)))

Structure

g   c u  -         G    A     U  Uucua   g 
 guc c gc uUCAGAGCA GGUC UGUCU UG     gca  
 ||| | || ||||||||| |||| ||||| ||     ||| g
 cgg g cg GAGUCUCGU UCGG ACAGG ac     ugu  
-   a u  u         G    A     U  ---ca   u 

Annotation confidence High

Genome context

JH000058.1: 3412039-3412118 [-]

Mature cgr-miR-6092-5p

• Accession: MIMAT0052487
• Description: Cricetulus griseus cgr-miR-6092-5p mature miRNA
• Sequence: 11 - UCAGAGCAGGGUCAUGUCUUUGU - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-6092-3p

• Accession: MIMAT0024019
• Description: Cricetulus griseus cgr-miR-6092-3p mature miRNA
• Sequence: 51 - UGGACAAGGCUGUGCUCUGAG - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75