Stem-loop cgr-mir-139

Accession

MI0020401

Description

Cricetulus griseus cgr-mir-139 precursor miRNA

Literature search

1 open access papers mention cgr-mir-139
(8 sentences)

Sequence

36262 reads, 110.0 reads per million, 55 experiments

cagguguaUUCUACAGUGCACGUGUCUCCAGUguggcucagaggcUGGAGACGCGGCCCUGUUGGAGUaacaacugaa
(((.((((((((((((.((.((((((((((((.(.......).)))))))))))))).))).)))))).))).)))..

Structure

--   g   -      -   U  A            g gg 
  cag ugu aUUCUA CAG GC CGUGUCUCCAGU u  c
  ||| ||| |||||| ||| || |||||||||||| |  u
  guc aca UGAGGU GUC CG GCGCAGAGGUcg a  c
aa   a   a      U   C  -            g ga 

Annotation confidence High

Genome context

JH000978.1: 521937-522014 [+]

Mature cgr-miR-139-5p

• Accession: MIMAT0023765
• Description: Cricetulus griseus cgr-miR-139-5p mature miRNA
• Sequence: 9 - UUCUACAGUGCACGUGUCUCCAGU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-139-3p

• Accession: MIMAT0023766
• Description: Cricetulus griseus cgr-miR-139-3p mature miRNA
• Sequence: 46 - UGGAGACGCGGCCCUGUUGGAGU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75