Stem-loop cgr-mir-22

Accession

MI0020463

Description

Cricetulus griseus cgr-mir-22 precursor miRNA

Literature search

1 open access papers mention cgr-mir-22
(1 sentences)

Sequence

200279 reads, 2796 reads per million, 6 experiments

gagccgcaguAGUUCUUCAGUGGCAAGCUUUauguccugacccagcuaAAGCUGCCAGUUGAAGAACUGUugcccucug
(((..((((((((((((((((((((.((((((.((.........))))))))))))).))))))))))))))).)))..

Structure

--   cc               -     A      u  ccu 
  gag  gcaguAGUUCUUCAG UGGCA GCUUUa gu   g
  |||  ||||||||||||||| ||||| |||||| ||   a
  cuc  cguUGUCAAGAAGUU ACCGU CGAAau cg   c
gu   -c               G     -      -  acc 

Annotation confidence Low

Genome context

JH003801.1: 17001-17079 [-]

Mature cgr-miR-22-5p

• Accession: MIMAT0023856
• Description: Cricetulus griseus cgr-miR-22-5p mature miRNA
• Sequence: 11 - AGUUCUUCAGUGGCAAGCUUU - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-22-3p

• Accession: MIMAT0023857
• Description: Cricetulus griseus cgr-miR-22-3p mature miRNA
• Sequence: 49 - AAGCUGCCAGUUGAAGAACUGU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75