Stem-loop cgr-mir-412

Accession

MI0020522

Description

Cricetulus griseus cgr-mir-412 precursor miRNA

Sequence

2152 reads, 30 reads per million, 6 experiments

ugggacggaUGGUCGACCAGCUGGAAAGUAAUugucucuaauGUACUUCACCUGGUCCACUAGCcgucggugcc
...(((((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).)))))......

Structure

---ugg     a    C      C   AA    -    u 
      gacgg UGGU GACCAG UGG  AGUA AUug c
      ||||| |||| |||||| |||  |||| ||||  
      cugcC AUCA CUGGUC ACU  UCAU uaau u
ccgugg     G    C      C   --    G    c 

Annotation confidence Low

Genome context

JH000884.1: 73204-73277 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cgr-mir-412

Mature cgr-miR-412-5p

• Accession: MIMAT0023954
• Description: Cricetulus griseus cgr-miR-412-5p mature miRNA
• Sequence: 10 - UGGUCGACCAGCUGGAAAGUAAU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-412-3p

• Accession: MIMAT0023955
• Description: Cricetulus griseus cgr-miR-412-3p mature miRNA
• Sequence: 43 - GUACUUCACCUGGUCCACUAGC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75