Stem-loop cgr-mir-20a

Accession

MI0020457

Description

Cricetulus griseus cgr-mir-20a precursor miRNA

Literature search

5 open access papers mention cgr-mir-20a
(7 sentences)

Sequence

433156 reads, 1013.0 reads per million, 55 experiments

ucuguggcacUAAAGUGCUUAUAGUGCAGGUAGuguccacucaucuACUGCAUUACGAGCACUUCCAGUgcugccagcug
.((((((((((.((((((((.((((((((.(((((......)).))))))))))).))))))))..))))))).)))...

Structure

--u   -       -A        A        G   -  uc 
   cug uggcacU  AAGUGCUU UAGUGCAG UAG ug  c
   ||| |||||||  |||||||| |||||||| ||| ||   
   gac gucgUGA  UUCACGAG AUUACGUC Auc ac  a
guc   c       CC        C        -   u  uc 

Annotation confidence High

Genome context

JH001979.1: 109227-109306 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cgr-mir-20a

Mature cgr-miR-20a-5p

• Accession: MIMAT0023847
• Description: Cricetulus griseus cgr-miR-20a-5p mature miRNA
• Sequence: 11 - UAAAGUGCUUAUAGUGCAGGUAG - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-20a-3p

• Accession: MIMAT0061411
• Description: Cricetulus griseus cgr-miR-20a-3p mature miRNA
• Sequence: 47 - ACUGCAUUACGAGCACUUCCAGU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75