Stem-loop cgr-mir-653

Accession

MI0020547

Description

Cricetulus griseus cgr-mir-653 precursor miRNA

Sequence

767 reads, 5.0 reads per million, 49 experiments

auucuuucagugUUGAAACAAUCUCUAUUGAGCCaagcuccaaagcaagUUCACUGGAGUUUGUUUCAAUAuugcaagaa
.(((((.((((((((((((((.(((((.(((((...(((....)))..))))).))))).)))))))))))))).)))))

Structure

a     u              U     U     Caa   c 
 uucuu cagugUUGAAACAA CUCUA UGAGC   gcu c
 ||||| |||||||||||||| ||||| |||||   |||  
 aagaa guuAUAACUUUGUU GAGGU ACUUg   cga a
-     c              U     C     -aa   a 

Annotation confidence High

Genome context

JH000059.1: 2589071-2589150 [-]

Mature cgr-miR-653-5p

• Accession: MIMAT0052480
• Description: Cricetulus griseus cgr-miR-653-5p mature miRNA
• Sequence: 13 - UUGAAACAAUCUCUAUUGAGCC - 34
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-653-3p

• Accession: MIMAT0023993
• Description: Cricetulus griseus cgr-miR-653-3p mature miRNA
• Sequence: 50 - UUCACUGGAGUUUGUUUCAAUA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75