Stem-loop cgr-mir-496

Accession

MI0020531

Description

Cricetulus griseus cgr-mir-496 precursor miRNA

Sequence

2637 reads, 15.0 reads per million, 53 experiments

ucccgaaaucaaguguucgaacggAGGUUGUCCAUGGUGUGUUCAUuuuauuuaugaugAGUAUUACAUGGCCAAUCUCCUuucggcacu
...........(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))

Structure

ucccgaaauca     u    c        U     GU         uua 
           agugu cgaa ggAGGUUG CCAUG  GUGUUCAUu   u
           ||||| |||| |||||||| |||||  |||||||||    
           ucacg gcuu CCUCUAAC GGUAC  UAUGAguag   u
-----------     -    U        C     AU         uau 

Annotation confidence Not enough data

Genome context

JH000884.1: 69107-69196 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from cgr-mir-496

Mature cgr-miR-496-5p

• Accession: MIMAT0052475
• Description: Cricetulus griseus cgr-miR-496-5p mature miRNA
• Sequence: 25 - AGGUUGUCCAUGGUGUGUUCAU - 46
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-496-3p

• Accession: MIMAT0023969
• Description: Cricetulus griseus cgr-miR-496-3p mature miRNA
• Sequence: 60 - AGUAUUACAUGGCCAAUCUCCU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75