Stem-loop cgr-mir-27a

Accession

MI0020473

Description

Cricetulus griseus cgr-mir-27a precursor miRNA

Literature search

1 open access papers mention cgr-mir-27a
(21 sentences)

Sequence

185928 reads, 2590 reads per million, 6 experiments

ccugaggagcAGGGCUUAGCUGCUUGUGAGCAagguccgcagcaagucgugUUCACAGUGGCUAAGUUCCGCucccccggg
((((.(((((.(((((((((((((.(((((((.((.(........))).)))))))))))))))))))).)))))..))))

Structure

    -a     A             U       a  u cgc 
ccug  ggagc GGGCUUAGCUGCU GUGAGCA gg c   a
||||  ||||| ||||||||||||| ||||||| || |    
gggc  ccuCG CUUGAAUCGGUGA CACUUgu cu g   g
    cc     C             -       g  - aac 

Annotation confidence High

Genome context

JH000286.1: 1078836-1078916 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cgr-mir-27a

Mature cgr-miR-27a-5p

• Accession: MIMAT0023874
• Description: Cricetulus griseus cgr-miR-27a-5p mature miRNA
• Sequence: 11 - AGGGCUUAGCUGCUUGUGAGCA - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-27a-3p

• Accession: MIMAT0023875
• Description: Cricetulus griseus cgr-miR-27a-3p mature miRNA
• Sequence: 52 - UUCACAGUGGCUAAGUUCCGC - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75