miRBase entry: cgr-mir-181c

Stem-loop cgr-mir-181c


Accession
MI0020422
Description
Cricetulus griseus cgr-mir-181c precursor miRNA


Sequence

19830 reads, 281 reads per million, 6 experiments
guuugggggAACAUUCAACCUGUCGGUGAGUuugggcagcucagacaaACCAUCGACCGUUGAGUGGACCccgaggccug
((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).))))...

Structure
---    g    AA        CU       A     ggca 
   guuu gggg  CAUUCAAC  GUCGGUG GUuug    g
   |||| ||||  ||||||||  ||||||| |||||    c
   cgga ccCC  GUGAGUUG  CAGCUAC CAaac    u
guc    g    AG        -C       -     agac 


Annotation confidence Not enough data
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Genome context
JH000286.1: 1109008-1109087 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-181c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-181c-5p

Accession MIMAT0023801
Description Cricetulus griseus cgr-miR-181c-5p mature miRNA
Sequence 10 - AACAUUCAACCUGUCGGUGAGU - 31
Evidence experimental
Illumina [1]

Mature cgr-miR-181c-3p

Accession MIMAT0023802
Description Cricetulus griseus cgr-miR-181c-3p mature miRNA
Sequence 49 - ACCAUCGACCGUUGAGUGGACC - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75