miRBase entry: cgr-mir-188

Stem-loop cgr-mir-188


Accession
MI0020432
Description
Cricetulus griseus cgr-mir-188 precursor miRNA


Sequence

11829 reads, 125 reads per million, 6 experiments
ccucucucaCAUCCCUUGCAUGGUGGAGGgugagcucucggaaaaccccucccacaugcaggguuugcaggauggugagc
.....(((((((((((((((((..((((((................))))))..)))))))).......)))).))))).

Structure
ccucu     -    -------        GU      ugagcuc 
     cucaC AUCC       CUUGCAUG  GGAGGg       u
     ||||| ||||       ||||||||  ||||||        
     gagug uagg       ggacguac  ccuccc       c
----c     g    acguuug        ac      caaaagg 


Annotation confidence Low
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Genome context
JH000611.1: 78196-78275 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cgr-mir-188
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-188

Accession MIMAT0023816
Description Cricetulus griseus cgr-miR-188 mature miRNA
Sequence 10 - CAUCCCUUGCAUGGUGGAGG - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75