Stem-loop cgr-mir-450b

Accession

MI0020527

Description

Cricetulus griseus cgr-mir-450b precursor miRNA

Sequence

7112 reads, 98 reads per million, 6 experiments

gcagaauuauUUUUGCAGUAUGUUCCUGAAUAcauaauauaagcgUAUUGGGAACAUUUUGCAUAUGuaauuuugu
((((((((((...(((((.((((((((.(((((...........))))))))))))).)))))...))))))))))

Structure

          UUU     U        G     auaa 
gcagaauuau   UGCAG AUGUUCCU AAUAc    u
||||||||||   ||||| |||||||| |||||    a
uguuuuaauG   ACGUU UACAAGGG UUAUg    u
          UAU     U        -     cgaa 

Annotation confidence High

Genome context

JH000353.1: 1169242-1169317 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cgr-mir-450b

Mature cgr-miR-450b-5p

• Accession: MIMAT0023962
• Description: Cricetulus griseus cgr-miR-450b-5p mature miRNA
• Sequence: 11 - UUUUGCAGUAUGUUCCUGAAUA - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-450b-3p

• Accession: MIMAT0023963
• Description: Cricetulus griseus cgr-miR-450b-3p mature miRNA
• Sequence: 46 - UAUUGGGAACAUUUUGCAUAUG - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75