Stem-loop cgr-mir-126a

Accession

MI0020387

Description

Cricetulus griseus cgr-mir-126a precursor miRNA

Sequence

861792 reads, 2074.0 reads per million, 52 experiments

cggugacagcaCAUUAUUACUUUUGGUACGCGcugugacacuucaaacUCGUACCGUGAGUAAUAAUGCGcugucagcag
.(.(((((((.(((((((((((.(((((((.....(((....)))....))))))).))))))))))).))))))).)..

Structure

-c g       a           U       CGcug   c 
  g ugacagc CAUUAUUACUU UGGUACG     uga a
  | ||||||| ||||||||||| |||||||     |||  
  c acugucG GUAAUAAUGAG GCCAUGC     acu c
ga g       C           U       -Ucaa   u 

Annotation confidence High

Genome context

JH003541.1: 12281-12360 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-126a

Mature cgr-miR-126a-5p

• Accession: MIMAT0052431
• Description: Cricetulus griseus cgr-miR-126a-5p mature miRNA
• Sequence: 12 - CAUUAUUACUUUUGGUACGCG - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-126a-3p

• Accession: MIMAT0023745
• Description: Cricetulus griseus cgr-miR-126a-3p mature miRNA
• Sequence: 49 - UCGUACCGUGAGUAAUAAUGCG - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75