Stem-loop cgr-mir-144

Accession

MI0020406

Description

Cricetulus griseus cgr-mir-144 precursor miRNA

Literature search

2 open access papers mention cgr-mir-144
(4 sentences)

Sequence

2370 reads, 13.0 reads per million, 21 experiments

cccuggcugGGAUAUCAUCAUAUACUGUAAGuuugugaugagacacUACAGUAUAGAUGAUGUACUAGucuggguacccg
(((.((((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))).)))......

Structure

------   u      G        A         -A    gu 
      ccc ggcugG AUAUCAUC UAUACUGUA  Guuu  g
      ||| |||||| |||||||| |||||||||  ||||   
      ggg cuGAUC UGUAGUAG AUAUGACAU  caga  a
gcccau   u      A        -         ca    gu 

Annotation confidence High

Genome context

JH001459.1: 338259-338338 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-144

Mature cgr-miR-144-5p

• Accession: MIMAT0023773
• Description: Cricetulus griseus cgr-miR-144-5p mature miRNA
• Sequence: 10 - GGAUAUCAUCAUAUACUGUAAG - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-144-3p

• Accession: MIMAT0052436
• Description: Cricetulus griseus cgr-miR-144-3p mature miRNA
• Sequence: 47 - UACAGUAUAGAUGAUGUACUAG - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75