Stem-loop cgr-mir-1843

Accession

MI0020428

Description

Cricetulus griseus cgr-mir-1843 precursor miRNA

Sequence

21587 reads, 82.0 reads per million, 55 experiments

ccuacaugaaUAUGGAGGUCUCUGUCUGACUUagggcagcuggcuaagUCUGAUCGUUCACCUCCAUACaagcuuuuaaa
..........(((((((((..(.(((.(((((((.........))))))).))).)...)))))))))............

Structure

--ccuacaugaa         -CU U   U       ggc 
            UAUGGAGGU   C GUC GACUUag   a
            |||||||||   | ||| |||||||   g
            AUACCUCCA   G UAG CUgaauc   c
aaauuuucgaaC         CUU C   U       ggu 

Annotation confidence High

Genome context

JH000107.1: 1106577-1106656 [+]

Mature cgr-miR-1843-5p

• Accession: MIMAT0061410
• Description: Cricetulus griseus cgr-miR-1843-5p mature miRNA
• Sequence: 11 - UAUGGAGGUCUCUGUCUGACUU - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-1843-3p

• Accession: MIMAT0023810
• Description: Cricetulus griseus cgr-miR-1843-3p mature miRNA
• Sequence: 49 - UCUGAUCGUUCACCUCCAUAC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75