Stem-loop cgr-mir-365

Accession

MI0020511

Description

Cricetulus griseus cgr-mir-365 precursor miRNA

Sequence

4036 reads, 56 reads per million, 6 experiments

gggaaaaugAGGGACUUUUGGGGGCAGAUGUGuuuccauuccgcuaucaUAAUGCCCCUAAAAAUCCUUAUugcucuugca
(((..((((((((..(((((((((((..((((...............)))).))))))))))).)))))))).))).....

Structure

-----   aa        AC           GA    uuucca 
     ggg  aaugAGGG  UUUUGGGGGCA  UGUG      u
     |||  ||||||||  |||||||||||  ||||      u
     cuc  uUAUUCCU  AAAAUCCCCGU  AUac      c
acguu   -g        -A           -A    uaucgc 

Annotation confidence Low

Genome context

JH000052.1: 3327293-3327373 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-365

Mature cgr-miR-365-5p

• Accession: MIMAT0023935
• Description: Cricetulus griseus cgr-miR-365-5p mature miRNA
• Sequence: 10 - AGGGACUUUUGGGGGCAGAUGUG - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-365-3p

• Accession: MIMAT0023936
• Description: Cricetulus griseus cgr-miR-365-3p mature miRNA
• Sequence: 50 - UAAUGCCCCUAAAAAUCCUUAU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75