Stem-loop cgr-mir-141

Accession

MI0020403

Description

Cricetulus griseus cgr-mir-141 precursor miRNA

Literature search

3 open access papers mention cgr-mir-141
(4 sentences)

Sequence

26214 reads, 63.0 reads per million, 49 experiments

gacuggcuuugggucCAUCUUCCAGUGCAGUGUUGGAugguugaaguaugaagcuccUAACACUGUCUGGUAAAGAUGGCccccggguca
...((((((.(((.(((((((((((.((((((((((..(.((........)).)..))))))))))))))..))))))).))).))))))

Structure

gac      u   u       --    U          Au g  gaa 
   uggcuu ggg cCAUCUU  CCAG GCAGUGUUGG  g uu   g
   |||||| ||| |||||||  |||| ||||||||||  | ||    
   acuggg ccc GGUAGAA  GGUC UGUCACAAUc  c aa   u
---      c   C       AU    -          cu g  gua 

Annotation confidence High

Genome context

JH000031.1: 4002691-4002780 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-141

Mature cgr-miR-141-5p

• Accession: MIMAT0052434
• Description: Cricetulus griseus cgr-miR-141-5p mature miRNA
• Sequence: 16 - CAUCUUCCAGUGCAGUGUUGGA - 37
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-141-3p

• Accession: MIMAT0023769
• Description: Cricetulus griseus cgr-miR-141-3p mature miRNA
• Sequence: 58 - UAACACUGUCUGGUAAAGAUGGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75