Stem-loop cgr-mir-296

Accession

MI0020476

Description

Cricetulus griseus cgr-mir-296 precursor miRNA

Literature search

1 open access papers mention cgr-mir-296
(1 sentences)

Sequence

8580 reads, 22.0 reads per million, 53 experiments

ggccuuucuggAGGGCCCCCCCUCAAUCCUGUUGugcucgcuucaGAGGGUUGGGUGGAGGCUCUCCugaaggag
...(((((.((((((((.((.(((((((((.(((.........)))))))))))).)).)))))))).)))))..

Structure

ggc     u        C  C         G   ugc 
   cuuuc ggAGGGCC CC CUCAAUCCU UUG   u
   ||||| |||||||| || ||||||||| |||   c
   ggaag CCUCUCGG GG GGGUUGGGA Gac   g
-ga     u        A  U         -   uuc 

Annotation confidence High

Genome context

JH000054.1: 2908788-2908862 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-296

Mature cgr-miR-296-5p

• Accession: MIMAT0052457
• Description: Cricetulus griseus cgr-miR-296-5p mature miRNA
• Sequence: 12 - AGGGCCCCCCCUCAAUCCUGUUG - 34
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-296-3p

• Accession: MIMAT0023880
• Description: Cricetulus griseus cgr-miR-296-3p mature miRNA
• Sequence: 46 - GAGGGUUGGGUGGAGGCUCUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75