miRBase entry: cgr-mir-192

Stem-loop cgr-mir-192


Accession
MI0020438
Description
Cricetulus griseus cgr-mir-192 precursor miRNA


Sequence

58988 reads, 806 reads per million, 6 experiments
gcacagggcuCUGACCUAUGAAUUGACAGCCAgugcucuggucucuccucuggcugccaauuccauaggucacagguaug
...((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).))

Structure
gca  g g  C         -     A       ugcucug 
   ca g cu UGACCUAUG AAUUG CAGCCAg       g
   || | || ||||||||| ||||| |||||||        
   gu u ga acuggauac uuaac gucgguc       u
---  a g  c         c     c       uccucuc 


Annotation confidence Low
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Genome context
JH001367.1: 289739-289818 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cgr-mir-192
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cgr-miR-192

Accession MIMAT0023824
Description Cricetulus griseus cgr-miR-192 mature miRNA
Sequence 11 - CUGACCUAUGAAUUGACAGCCA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21392545
    Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
    "J Biotechnol (2011) 153:62-75