Stem-loop cgr-mir-192

Accession

MI0020438

Description

Cricetulus griseus cgr-mir-192 precursor miRNA

Literature search

2 open access papers mention cgr-mir-192
(3 sentences)

Sequence

597864 reads, 2990.0 reads per million, 55 experiments

gcacagggcuCUGACCUAUGAAUUGACAGCCAgugcucuggucucuccucuggCUGCCAAUUCCAUAGGUCACAGguaug
...((.(.((.((((((((((((((.(((((((................))))))).))))).))))))))).)).).))

Structure

gca  g g  C         -     A       ugcucug 
   ca g cu UGACCUAUG AAUUG CAGCCAg       g
   || | || ||||||||| ||||| |||||||        
   gu u GA ACUGGAUAC UUAAC GUCgguc       u
---  a g  C         C     C       uccucuc 

Annotation confidence High

Genome context

JH001367.1: 289739-289818 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-192

Mature cgr-miR-192-5p

• Accession: MIMAT0023824
• Description: Cricetulus griseus cgr-miR-192-5p mature miRNA
• Sequence: 11 - CUGACCUAUGAAUUGACAGCCA - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-192-3p

• Accession: MIMAT0052441
• Description: Cricetulus griseus cgr-miR-192-3p mature miRNA
• Sequence: 54 - CUGCCAAUUCCAUAGGUCACAG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75