Stem-loop cgr-mir-199a

Accession

MI0020448

Description

Cricetulus griseus cgr-mir-199a precursor miRNA

Sequence

26186 reads, 359 reads per million, 6 experiments

ccccgccauCCCAGUGUUCAGACUAGCUGUUCagcaggcugugauauguACAGUAGUCUGCACAUUGGUUaggcugggcg
(((.(((...(((((((.(((((((.((((.((.((.....))...)).))))))))))).)))))))...))).)))..

Structure

--   c   auC       U       G    U  --g  g 
  ccc gcc   CCAGUGU CAGACUA CUGU Ca   ca g
  ||| |||   ||||||| ||||||| |||| ||   || c
  ggg cgg   GGUUACA GUCUGAU GACA gu   gu u
gc   u   aUU       C       -    u  aua  g 

Annotation confidence Low

Genome context

JH000173.1: 721995-722074 [+]

Mature cgr-miR-199a-5p

• Accession: MIMAT0023836
• Description: Cricetulus griseus cgr-miR-199a-5p mature miRNA
• Sequence: 10 - CCCAGUGUUCAGACUAGCUGUUC - 32
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-199a-3p

• Accession: MIMAT0023837
• Description: Cricetulus griseus cgr-miR-199a-3p mature miRNA
• Sequence: 50 - ACAGUAGUCUGCACAUUGGUU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75