Stem-loop cgr-mir-423

Accession

MI0020523

Description

Cricetulus griseus cgr-mir-423 precursor miRNA

Sequence

218164 reads, 3038 reads per million, 6 experiments

gaaguuaggcUGAGGGGCAGAGAGCGAGACUUUucuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuucc
(((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).))))).

Structure

-     u            -AG   G    A     cua 
 gaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
 ||||| ||||||||||||   ||| |||| |||||   u
 cuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
c     u            GAG   G    -     ccu 

Annotation confidence High

Genome context

JH000631.1: 520509-520586 [-]

Mature cgr-miR-423-5p

• Accession: MIMAT0023956
• Description: Cricetulus griseus cgr-miR-423-5p mature miRNA
• Sequence: 11 - UGAGGGGCAGAGAGCGAGACUUU - 33
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-423-3p

• Accession: MIMAT0023957
• Description: Cricetulus griseus cgr-miR-423-3p mature miRNA
• Sequence: 47 - AGCUCGGUCUGAGGCCCCUCAGU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75