Stem-loop cgr-mir-215

Accession

MI0020461

Description

Cricetulus griseus cgr-mir-215 precursor miRNA

Sequence

214027 reads, 2954 reads per million, 6 experiments

uacaggaaaAUGACCUAUGAAUUGACAGACAguauggcuguguaugUCUGUCAUUCUGUAGGCCAAUauucuguaug
(((((((...((.(((((((((.((((((((.((((....)))))))))))))))).))))).))...)))))))..

Structure

--       aaA  A     -    U        g    g 
  uacagga   UG CCUAU GAAU GACAGACA uaug c
  |||||||   || ||||| |||| |||||||| ||||  
  augucuu   AC GGAUG CUUA CUGUCUgu augu u
gu       aUA  C     U    -        -    g 

Annotation confidence Low

Genome context

JH000002.1: 3327065-3327141 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cgr-mir-215

Mature cgr-miR-215-5p

• Accession: MIMAT0023853
• Description: Cricetulus griseus cgr-miR-215-5p mature miRNA
• Sequence: 10 - AUGACCUAUGAAUUGACAGACA - 31
• Evidence: experimental ; Illumina [1]

Mature cgr-miR-215-3p

• Accession: MIMAT0023854
• Description: Cricetulus griseus cgr-miR-215-3p mature miRNA
• Sequence: 47 - UCUGUCAUUCUGUAGGCCAAU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75